Question: Identification Of Replicate Outlier
0
Dave Corney • 50 wrote:
Hello list,
I've been analyzing an experiment with two groups each with three
replicates. My workflow was TopHat (paired end) -> Cufflinks ->
CuffDiff.
Unfortunately, there are not many significant differences identified
by
CuffDiff.
I am wondering whether one of my replicates might be an outlier. Does
anybody have a suggestion on how to search for an outlier? The quality
statistics of the unprocessed data looked equally good for all
samples, so
I don't think that this is a problem.
Thanks,
Dave
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modified 6.1 years ago
by
fubar ♦ 1.1k
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written
6.1 years ago by
Dave Corney • 50