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• Tophat output Bam file
  Dear Sir, Tophat output bam file couldn't be downloadable there is an error showing this "usegal...
• Tophat2 error when using a custom reference genome
  why everytime tophat is showing error with the fastqsanger files ? "ERROR: An error occurred with...
• Job errors at https://usegalaxy.org Galaxy version 17.09 18.01
  Dear Sir, The bam file from tophat is not downloadable it is showing HTTP error repeatedly. Pls r...
• Tophat Error for SRA accessions
  Dear Sir, I have downloaded SRR924323,SRR912644,SRR915924 & SRR915925 from NCBISRA toolhit. A...
• Error to run Fastqc
  Dear Sir, Fastqc is not run they show the Fatal error: Exit code 1 (). So please help me sir.
• Help
  Hello; I am having the following problems with RNAseq using galaxy; we have installed the Galaxy...
• Tophat failed to run on RNAseq data?
  Tophat failed to run on my RNAseq data. Before running tophat, I groomed, trimmed, and filtered m...
• TopHat error (An error occurred setting the metadata for this dataset Set it manually or retry auto-detection)
  Hello, I was trying to running the TopHat on galaxy but this error show up everytime I try: >...
• MACS2 Error while running a shared workflow
  Hi, I used a workflow for ChIP seq, " ChIP seq analysis for intersect"; owner: klaourakis, June13...
• Tophat Gapped-read mapper for RNA-seq data
  1 job has been successfully added to the queue - resulting in the following datasets: 18: Tophat...
• TopHat troubleshooting about metadata
  Hi, I am novice to RNA-Seq Analysis and Galaxy server. Currently am running a work-flow of 40 ste...
• Local Instance Of Galaxy Installation Problems
  Any clue, why i can not see galaxy on local host error when i run the shell script is socket.er...
• how to do tophat
  i have taken 1.-SRA sequence for galaxy from ebi in fastq.qz format 2. converti...
• TOPHAT ERROR tool execution
  Hi,   i tried running my datasets and tophat gives  error all the time.  Thanks
• Fw: Problem In Data Uploading
  Hi, I am a first time user in galaxy for analysis of my RNA-Seq data. I am facing probl...
• TOPHAT MAPPED READS
  Hi, i am using the RNA seq pipeline for transcriptome analysis. i ahve the annotation anf gff fi...
• Error Running Metagenomic Analysis
  Hello, I am have created the workflow for metagenomic analysis. I am using fetch taxonomic repre...
• Filter for sequencing reads mapped to multiple loci
  Hello I have done both a hisat2 and tophat alignment, both yielding BAM files which I later con...
• Problem with TopHat in Galaxy using data from Nature Protocols
  Hi, I am a graduate student who began RNA-seq data analysis recently. I am having a trouble with...
• error running DESeq2
  Hello, I am running DeSeq2 on tophat Htseq converted files. The job is marked red with an error,...
• Can't map my pairend samples with TopHat after grooming.
  Hello everyone, I need to do TopHat my groomed data files, which are pair-ended. I groomed my ...