Hello
I installed galaxy into a local machine following the instruction at https://wiki.galaxyproject.org/Admin/GetGalaxy, but was not able to install ANY tools (after set myself as admin user).
it always return me a error message as:
"Dependency was not resolved by any resolver module."
some log details as:
galaxy.tools.deps DEBUG 2016-03-04 16:57:40,260 Find dependency pca version None galaxy.tools.deps DEBUG 2016-03-04 16:57:40,260 Resolver tool_shed_packages returned <galaxy.tools.deps.resolvers.nulldependency object="" at="" 0x104f47b90=""> (isnull? True) galaxy.tools.deps DEBUG 2016-03-04 16:57:40,260 Resolver galaxy_packages returned
by the way, i removed the "#" from in front of "dependency_resolvers_config_file" in galaxy.ini, it did not help either.
The dependency resolves config file specifies an ordering and options for how
Galaxy resolves tool dependencies (requirement tags in Tool XML). The default
ordering is to the use the tool shed for tools installed that way, use local
Galaxy packages, and then use conda if available.
See https://github.com/galaxyproject/galaxy/blob/dev/doc/source/admin/dependency_resolvers.rst
for more information on these options.
dependency_resolvers_config_file = config/dependency_resolvers_conf.xml
appreciate if anybody could advise how to fix it
Thank you Tianhua
Have you installed any dependency from the ToolShed as admin?
No, i was not able to install anything (as admin user), and every time it returned the same error message:"Dependency was not resolved by any resolver module."
Then you need to configure Galaxy properly. Have you changed the galaxy.ini accordingly?
Dear Bjoern,
I have tried to configure it, though I am not sure I did it properly or not (I am completely a newbie), I have the configure file attached here, it would be great if you could have a look and advise on what I missed.
By the way, the computer I installed Galaxy in is a Mac Pro, OS X Yosemite v10.10.5, and I installed galaxy under: /Users/218496f/galaxy/
Your assistance are really appreciated.
All the best Tianhua
From: Bjoern Gruening on Galaxy Biostar <notifications@biostars.org<a rel="nofollow" href="mailto:notifications@biostars.org">notifications@biostars.org> Reply-To: "galaxystar+8cc825fd+code@biostars.io<mailto:galaxystar+8cc825fd+code@biostars.io>" <galaxystar+8cc825fd+code@biostars.io<mailto:galaxystar+8cc825fd+code@biostars.io>> Date: Sunday, 6 March 2016 1:38 am To: Tianhua He <tianhua.he@curtin.edu.au<a rel="nofollow" href="mailto:Tianhua.He@curtin.edu.au">Tianhua.He@curtin.edu.au> Subject: [galaxy-biostar] Galaxy could not install any tools
Activity on a post you are following on Galaxy Biostarhttp://biostar.usegalaxy.org
User Bjoern GrueningBjoern Gruening wrote Comment: Galaxy could not install any toolsC: Galaxy could not install any tools:
Then you need to configure Galaxy properly. Have you changed the galaxy.ini accordingly?