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Question: Re: Inquiry About Cloud Computing On Galaxy
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gravatar for Enis Afgan
8.0 years ago by
Enis Afgan • 680
Enis Afgan • 680 wrote:
Hi, Unfortunately Galaxy does not have a ready option to be used on a Hadoop based cluster. I am not familiar with methods of interacting with hadoop clusters; however, if there is DRMAA support for a hadoop manager, the interaction should be fairly straightforward. The distribution of job load however, may be more involved. I'm cc-ing the galaxy-user list so this question gets more attention and possibly a more complete answer. Enis
galaxy • 717 views
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modified 8.0 years ago by James Taylor ♦ 470 • written 8.0 years ago by Enis Afgan • 680
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gravatar for James Taylor
8.0 years ago by
James Taylor ♦ 470
United States
James Taylor ♦ 470 wrote:
While we are planning to make it possible to run tools in Galaxy that use a hadoop cluster, hadoop is a completely different model from a general purpose cluster, and tools need to be specifically written for use with hadoop. Only some analyses decompose well under the map- reduce model that hadoop requires. Are you implementing your own analysis tools for use with hadoop? -- jt
ADD COMMENT • link written 8.0 years ago by James Taylor ♦ 470
We have several tools, like Kmer filtering, which can be run on Hadoop cluster. I saw Galaxy Cloud project on your web page. It would be great if you will develop a solution to integrate Hadoop option into Galaxy. Thanks, X. Meng
ADD REPLY • link written 8.0 years ago by Xiandong Meng • 10
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