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• Mm7 Chromosome Name
  Hello, I have a set of coordinates for mm7 that I have been using try to extract the genomic seq...
• Query Related To Lift Over
  Hi all,I have data with RGSC 3.4 build, along with the start and end coordinates of genes. I want...
• Workflows With Tools That Use Dbkey
  Hello, Is there a way to add a tool that needs a 'dbkey' information (that is - a genome metadat...
• Is there an mm10 MAF?
  Is there an mm10 MAF that can be used? Or is Galaxy only supporting hg19? Thanks in advance!
• Lift-Over tool in Galaxy error: 'Exception caught attempting conversion: '
  Dear all, I'm trying to remap mm9 genome coordinates to mm10 from a .BED file. Galaxy "Lift-Ove...
• Rn6 support for Lift-Over?
  Does anyone know if there are plans to add support for the Rn6 genome assembly to the Lift-Over t...
• Need help with "SICER" tool
  How can you add a genome to SICER in Galaxy?     Tool name: SICER Tool version: 0.0.1 Tool ID...
• Lift Over Function For Ce5 (Ws180) To Ce6
  Hi, I tried to lift over a list of chromosome mapped to WS180 (ce5) to ce6, but it seems that ga...
• Using Lift-Over to convert GRCh37 to GRCh38. "no option available" for converting "To" field
  I have a bed file in GRCh37 coordinates that I want to convert to GRCh38. I am trying to use li...
• Lift-Over Update With Orangutan Assembly
  Hello, Is there any chance to have the orangutan assembly included in the Lift-Over menu any tim...
• Can you use Galaxy Lift-over to convert ce10 genome coordinates to ce11?
  I am trying to convert wig (or bigwig) and bed (or bigbed) files from the UCSC ce11 (WBcel235) co...
• Lift-Over: Unique Baboon Locations Convert to Single Human Location
  I am currently trying to see which SNPs from a GBS project I'm working on convert and overlap kno...
• Convert genome coordinates from hg19 to mm9
  Hello, I'd like to use the COSMIC data to compare with my mouse exome-seq data, so I'm trying t...
• Featurecounts built-in annotation hg38, hg19, mm10, mm9
  "Parameter genome requires a value, but has no legal values defined" stop me from execution. whic...
• Locally cached sequence not detected from DBkey in cuffmerge when using mm10
  Hi, I'm running a cufflinks pipeline on the public server, and I'm having trouble using the loca...
• HiSat2- over 50% of reads failed to align
  Hello, I am using Hisat2 to align reads to a reference genome (mm10). However, over 50% of read...
• instructions for fetching and install mm10 genome and hisat indexing for local galaxy
  Hi all, Is there a kind soul that could take me through a step-by-step of fetching and indexing ...
• SICER is not available for the genome.
  I tried to use Sicer to run Chi-Seq data, but the error message showed "SICER is not available fo...