Question: HiSat2- over 50% of reads failed to align
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Lindsay44 • 0 wrote:
Hello,
I am using Hisat2 to align reads to a reference genome (mm10).
However, over 50% of reads failed to align to the genome.
What went wrong? Is it the reference genome I am using? Is it the quality of the data?
Thanks.
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modified 2.4 years ago
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Jennifer Hillman Jackson ♦ 25k
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2.4 years ago by
Lindsay44 • 0