Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Annovar is missing heterozygous and homozygous information
0
gravatar for Mic
3.2 years ago by
Mic • 70
Australia
Mic • 70 wrote:

Hello,

My VCF file contains information about heterozygous and homozygous information, but after I run Annovar the information are gone.

How is it possible to add the heterozygous and homozygous information information to Annovar output.

Thank you in advance.

Mic

 

 
annotation variants annovar vcf galaxy • 859 views
ADD COMMENT • link •
modified 3.2 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.2 years ago by Mic • 70
0
gravatar for Jennifer Hillman Jackson
3.2 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Please see the tools under the group "NGS: VCF Manipulation". VCFCombine may be enough, but explore the other manipulation options to be certain that there is more these tools can do that will enable optimal downstream-stream data use.

Now, annotation can be included directly within Annovar, but these require specific pre-computed reference data. These won't be representative of the annotation already included in inputs based on content derived from upstream analysis.

Take care, Jen, Galaxy team
ADD COMMENT • link modified 3.2 years ago • written 3.2 years ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 175 users visited in the last hour