Question: Annovar hg38 databases
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clizama • 0 wrote:
Hey,
I was doing a tutorial For SNP detection. I was using the freebayes and VCFfilter using hg19 like a reference genome first and then I did the same analysis using hg38 like reference genome when I tried to annotate the VCF file with Annovar using hg19 like reference genome all was ok, however when I tried to annotate the file with hg38, the annovar didnt show me the databases. I was wondering if has anyway to setup the databases in galaxy for annovar in order to be able to annotate the vcf files with hg38 reference genome?
Thanks Carlos
