Question: fetch taxonomic representation tool only returns a small subset of original
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rebeccarosetm • 0 wrote:
I used the NCBI BLAST+ blastn in Galaxy and get a return of approximately the same number of hits as my reads (approx 50,000). However when i use the Fetch Taxonomic Representation tool, I only get back some of the hits (10% or so), not in the same order, and with the correct annotation. I do have to use the Convert tool on the megablast result file because the FTR tool will not recognize the gi numbers with the pipes in the names (so I change the pipes to tabs). Manually checking the file, this appears to not introduce any errors. Help is appreciated! Thanks!
