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Question: "Paired collection" as output
0
gravatar for bvh
4.3 years ago by
bvh • 0
Netherlands
bvh • 0 wrote:

Hi,

I am currently messing around with the new awesome collections and pairedcollections feature in galaxy. I am able to get my tool working with them as input, however it would also be nice to be able to output a 'paired collection'. Is this feature already implemented, and if so, could you provide me with a small xml example? 

Kind regards,

Bas

 

PS:

I found this link which was quite useful for creating a tool using the new feature. 

 

 

 

 
tool xml collections paired • 1.3k views
ADD COMMENT • link •
modified 4.3 years ago by Martin Čech ♦♦ 4.9k • written 4.3 years ago by bvh • 0
4
gravatar for Martin Čech
4.3 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

The feature is in the backlog and is going to be implemented. Progress is tracked at this card: https://trello.com/c/ndVQmt3G/1857-tools-should-be-able-to-generate-one-or-more-dataset-collections

Vote on the card if you want to raise the priority.
ADD COMMENT • link written 4.3 years ago by Martin Čech ♦♦ 4.9k

Martin, now that this has been fully implemented, what is the recommended way of producing a list:paired collection as output? The tests have used nested collections as input but not as output https://github.com/galaxyproject/galaxy/blob/dev/test/functional/tools/collection_nested_test.xml

 

Please also see this unresolved question here C: Documentation for <collection> tag?

ADD REPLY • link modified 3.4 years ago • written 3.4 years ago by mrals89 • 50
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