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• automated -remove "x" first lines- , "x" depending of tool -count lines-
  Hi. Currently, I know how to obtain the exact number of lines of a table, I call it "x". I woul...
• No workflow control tool for inputing datasets
  Hi, I am using the Galaxy main site and have created a workflow, however the left most tool bar l...
• Variable Number Of Inputs In Workflow (Or Optional Inputs)
  Hi, I wanted to build a workflow where the first step would be a tool that can have a variable n...
• Is it possible for workflow parameters to take information from the names of input datasets? e.g. ${Read_group } is set to be the first three characters of input dataset name.
  HI. I would like to run a workflow in parallel on list of  multiple data sets (using the dataset ...
• how to manage tool versions in a local instance ?
  Hi, I read the doc about tools integration but I would like to know if there are other ways than...
• Workflow inserting input name to output file
  I've looked through some of the answers but they are all about renaming the output file. I would ...
• Ordering Workflow Inputs On Run?
  Hi, I have a workflow that requires a large number of files that happen to come in pair but are ...
• Conditional Execution (Workflow)
  Hello, is there a tool or an intelligent way to add an conditional execution of a step within ...
• How to know if mapping to reference genome was succesful?
  Given a set of BAM files for single-end reads just mapped with BWA tool, how can I have an overvi...
• Walltime on job_config
  Hi All,   I am installing Galaxy in our HPC facility and I would like some advices regarding se...
• to block option in tools in workflow
  Hi everybody, I would like to know how I can block some options in the tools incorporating in my...
• Parallelizing An Ngs Mapping Workflow
  Hello, I'd like to use Galaxy on our local beowulf cluster for NGS workflows. One typical use ca...
• Running multiple workflows with multiple inputs
  Hi, I recently learnt to create workflows and to script in galaxy using bioblend. Seems like a v...
• discover_dataset rename dataset in history
  Hi, I am using discover_dataset to retrieve multiple output files created. The xml works fine, bu...
• filter by fasta ids
  Hi. I am new to using Galaxy and I'm trying to download useful tools. I have a set of masked file...
• How do I automagically make informative dataset names at different workflow stages?
  I have a collection of 16 FASTQ files that I have made into a list as input to a simple workflow....
• Creating Appropriate Tool Dependencies for Custom Tool in Galaxy
  Hello everyone, I am trying to create my own custom tool in Galaxy using the python API for iRODS...
• Workflows With Parameters
  Hi, I was talking about the Galaxy workflow with someone recently. He pointed out an "obvious" l...
• Filtering for the frequency of ALT alleles
  Hi, When running CloudMap unmapped mutant workflow, I get a SnpEff file with Homozygous or heter...