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Question: how to set up ruby environment
0
gravatar for Brad Langhorst
4.4 years ago by
Brad Langhorst • 100
United States
Brad Langhorst • 100 wrote:

I need to set up a ruby environment for a tool.

I see 

https://wiki.galaxyproject.org/ToolDependenciesTagSets

has a setup_ruby_environment but I don't understand how to use it.

Does anyone know of an example tool that does this?

(ideally it would specify a ruby version and a gem set or run bundler to get all the gems available)

 
tool galaxy ruby • 950 views
ADD COMMENT • link •
modified 4.4 years ago by Bjoern Gruening ♦ 5.1k • written 4.4 years ago by Brad Langhorst • 100
0
gravatar for Bjoern Gruening
4.4 years ago by
Bjoern Gruening ♦ 5.1k
Germany
Bjoern Gruening ♦ 5.1k wrote:

Hi Brad,

have a look at https://github.com/bgruening/galaxytools/blob/master/orphan_tool_dependencies/package_ruby2_bioruby_1_4/tool_dependencies.xml.

It's one of my test repositories for the ruby tag.

Cheers,

Bjoern

 
ADD COMMENT • link written 4.4 years ago by Bjoern Gruening ♦ 5.1k

I'm wondering about how these packages are resolved.

Are you using bundler to resolve the packages?

Is there any support for Gemfile or .ruby_version in the tool directory?

Maybe you can point me at the setup_ruby_environment action - i couldn't find it in your repo.

Thanks!

Brad

 

 

ADD REPLY • link written 4.4 years ago by Brad Langhorst • 100

Hi Brad,

are you searching for https://github.com/bgruening/galaxytools/blob/master/orphan_tool_dependencies/package_ruby_2_0/tool_dependencies.xml ?

You can specify a path to a Gemfile yes and the version is given by the referenced package (package_ruby_2_0).

Cheers,

Bjoern

ADD REPLY • link written 4.4 years ago by Bjoern Gruening ♦ 5.1k
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