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• Snp Calling Problems
  Dear all, I have been looking for an answer to my problem in all the Galaxy Support resources bu...
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• Help! I'm using trimmomatic in Galaxy, but it doesn't recognize a part of input dataset.
  I'm using Trimmomatic to trimming paired end reads. When I set "Single-end or paired-end reads?"...
• Output of FLASH can't be read by other tools?
  Hi, I have used FLASH to assemble some reads. They are still in FASTq format. However I can't ge...
• Bowtie2/Samtools files are not visualized with Trackster: Fatal error Exit code 255 ()
  I am trying to map 8 paired-end reads on to the same reference custom-build genome. Each of these...
• HISAT problem on local galaxy
  Dataset 33: HISAT on data 3Tool execution generated the following error message: Fatal error: Ex...
• Fasta Generation From Pileup For Snp Detection
  I'm interested in generating a fasta file from Ilumina paired reads of my wild type strain. I hav...
• Genbank Submission - How To Generate Fasta (Not Fastq) Files
  I still haven't found an easy solution to this problem and I am afraid I'm going to have to write...
• not select Fastq File
  I get data (Fastq File Illumina), but when I would like to use Fastq summary statistics (NGS>Q...
• fastq files are't recognized by tools
  Hey, I'm looking forward to do some NGS analysis and would like to use your provided NGS tools. ...
• SAM Split tools only generate one split data
  Hi there, I'm using Galaxy to analyze my ChIP-seq data, but when I use NGS: SAMtools → Split to ...
• Question About Fastq Groomer
  To Whom It May Concern: I am a new user to Galaxy. In the function of "FASTQ Groomer", I notic...
• Can I generate random output file in galaxy using XML command Tag
  Hii  I integrate the SoftSearch tool in galaxy project it will generate .vcf file but i want to ...
• The Original Subject For The Thread
  [mailto:galaxy-user-bounces@lists.bx.psu.edu] On Behalf Of galaxy-user-request@lists.bx.psu.edu T...
• Fastq files not recognized
  I have uploaded data sets that are labelled fastqsanger.gz. But when I try to use those data set...
• Using the Extract Genomic DNA tool in Galaxy
  Hi everyone! So I am trying to use the the NGS: SAMtools function in galaxy to generate consensu...
• GATK Select Variants Reference Genome
  Hi, I'm trying to use GATK Tools Select Variants on VCF files of whole genome sequencing data, ...
• Extract Genomic DNA - no recognized datasets
  Hi, I am new to galaxy. I wish to use the Extract Genomic DNA tool, but under "Fetch sequences f...