Various Import Dir'S

Question: Various Import Dir'S

9.4 years ago by

Erick Antezana • 570 wrote:

Hi, how can I defined various library import directories within the "universe_wsgi.ini" by using the "library_import_dir" ? same question for "user_library_import_dir"? thanks, Erick

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modified 9.2 years ago by Steve Taylor • 240 • written 9.4 years ago by Erick Antezana • 570

9.4 years ago by

Greg Von Kuster • 840

Greg Von Kuster • 840 wrote:

Make sure there are no files within the directory, only sub directories - e.g.: <library_import_dir> <subdirectory1> files <subdirectory2> files If there are any files in a directory, they are loaded and directories are ignored. Greg Von Kuster Galaxy Development Team

ADD COMMENT • link written 9.4 years ago by Greg Von Kuster • 840

9.2 years ago by

Steve Taylor • 240

Steve Taylor • 240 wrote:

Hi, Are there any plans to incorporate the motif finders MEME (http://meme.sdsc.edu/meme/intro.html ) and/or Weeder (http://159.149.109.9/modtools/) into Galaxy? Thanks, Steve

ADD COMMENT • link written 9.2 years ago by Steve Taylor • 240

Stephen: Not at the moment. However, if you know someone who has tried wrapping these for Galaxy, we can work with them to integrate these tools into our public instance. Thanks, anton galaxy team Anton Nekrutenko http://nekrut.bx.psu.edu http://galaxyproject.org

ADD REPLY • link written 9.2 years ago by Anton Nekrutenko ♦ 1.7k

Hi, Would MEME be easier to integrate given that ememe is an EMBASSY program and you already have EMBOSS in Galaxy? Thanks, Steve

ADD REPLY • link written 9.2 years ago by Steve Taylor • 240

Both should be quite easy. ememe will likely be easier since the EMBOSS tools are completely command line configurable. Weeder is slightly more difficult since it doesn't allow you to set the name of the output files. A simple wrapper script can deal with that though.

ADD REPLY • link written 9.2 years ago by James Taylor • 320

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