Question: Genomic Intervals Coverage: Csv Of 2Nd Dataset Identifiers
0
gravatar for Kumar, Charu Gupta
5.7 years ago by
Kumar, Charu Gupta10 wrote:
Hi, My question is about "operating on genomic intervals, Coverage" tool. I wanted a csv list of identifiers (c4) in the second dataset that cover each interval in the first dataset. How would I go about getting such a list? Thank you so much in advance. Best, Charu Charu Gupta Kumar, Ph.D.
• 656 views
ADD COMMENTlink modified 5.6 years ago by Jennifer Hillman Jackson25k • written 5.7 years ago by Kumar, Charu Gupta10
0
gravatar for Jennifer Hillman Jackson
5.6 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello Charu, To get the identifiers from column 4 into a single, tab delimited list from an interval/bed file, use the "Group" tool, like this: To convert the tabular delimiter to a comma, use a text editor after download. Galaxy in a local install could also be modified to do the replace, I can think of a few places - with "Convert delimiters" in Text Manipulation" being perhaps the simplest choice to customize. Best, Jen Galaxy team -- Jennifer Hillman-Jackson Galaxy Support and Training http://galaxyproject.org
ADD COMMENTlink written 5.6 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 172 users visited in the last hour