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• Adding mm10 genome to Amazon Cloud Instance
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• Workflow Assistance
  After viewing tutorials and reading the information associated with various tools, I ask that you...
• Missing genome for SAM-to-BAM conversion
  Hi, I have a SAM file of aligned RNA-Seq reads that I need to convert to a BAM. Problem is, whe...
• Plant reference genomes for sequence alignment and finding DEGs
  Reference genome of Oryza sativa sp. Japonica not uploaded in galaxy browser. which can be used f...
• Quick Question About Cuff Compare
  Hi! Just a quick question.... I am trying to use cuffcompare for human data and want to use a Se...
• upload at VirAmp
  How do I upload files at VirAmp via FTP? I cant find the tools to do it at viramp.com or at the ...
• Missing tools for genome assembly
  There is no icon for NGS Analysis in my Galaxy tool list. I can not find Velvet or Spades for gen...
• Problem running BWA-MEM mapping
  I am trying to run BWA-MEM mapping in galaxy. I have uploaded FASTQ files using fastqcssanger and...
• Uploading other Reference genome
  Can I upload my own reference genome, i.e. Toxoplasma gondii to map RNAseq data to?
• List Of Genomes
  Hi All, I was trying to map a set of data to a genome, Klebsiella pneumoniae subsp. Pneumoniae M...
• How to upload Mouse reference genome mm10, in Fasta format to My Galaxy History
  I tried to use an imported "tuxedo protocol" RNA-seq pipeline from public workflows. I found mous...
• HISAT2/TOPHAT alignment to a Rabbit Genome
  Hello, I have multiple samples of human stem-like cells that were retrieved from an animal model....
• How to upload a reference genome
  Hi!, I am a new user in the Galaxy project and I want to map my reads with a genome that is not i...
• BWA-MEM Tool not recognizing fastq inputs
  I am attempting to use the NGS mapping tool BWA-mem. I have uploaded my reference genome, in addi...
• Bowtie-build : Finding information from bowtie2 indexed genome file
  Hi all! I did a bowtie2 index on a genome file using bowtie2-build. How do I find the following ...
• Create a BedGraph of genome coverage
  Hello! Excuse me, where can I find "Create a BedGraph of genome coverage" tool?
• TopHat Dataset generation errors
  Hello I'm trying to use TopHat in public server for alignment my RNA-seq data that generated fro...
• The uploaded data can not be found but the space was still occupied
  I uploaded my data few days before but restart my computor this morning. When I login to Galaxy, ...
• How to upload a genome from igenomes to Galaxy?
  As above - how can I directly upload a reference genome from http://cufflinks.cbcb.umd.edu/igenom...
• why do Galaxy have a reference genome of sheep?
  Hi: I am analyzing RNA-seq data of sheep using Galaxy. But I can not find a reference genome abou...
• tophat reference genome
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