Question: Does Galaxy Support The Ucsc Data Points Format?
0
Mikhail Spivakov • 10 wrote:
Hi everyone,
I'm wondering if galaxy understands the UCSC data points format (for
example, the one produced by exporting phastcons17way scores. All I
managed to do so far is import these data into galaxy, but I couldn't
find
any supported operations for this format.
It would be very useful, for example, if galaxy could convert these
data
into genomic intervals using a user-defined threshold (eg, extract
regions
with phastcons scores > 0.5) - but maybe it can already do it and I
just
don't know how?
Many thanks
Mikhail
--
Mikhail Spivakov, PhD
Postdoctoral Fellow
European Molecular Biology Laboratory
Wellcome Trust Genome Campus, Hinxton
Cambridge CB10 1SD
UK
Tel +44 (0) 1223 49 26 60
Mob +44 (0) 7985 09 66 75
spivakov@ebi.ac.uk