Question: Getting galaxy to install package specified in wrapper
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johnathanwong4 • 10 wrote:
I'm writing a wrapper for a tool right now but I'm having trouble getting galaxy to install the package specified in the wrapper in order to test the wrapper.
Using the example in https://docs.galaxyproject.org/en/latest/dev/schema.html#tool-requirements-requirement as my guideline, I have something similar in my xml to install https://bioconda.github.io/recipes/prince/README.html, but when I tried running the wrapper in my local instance of galaxy, it gives me an error and says command not found.
Do I need a tool dependency xml too? I was under the impression that galaxy, upon seeing a requirement package tag in the xml, will try to install the package when the tool is ran. Is that not the case?
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modified 5 weeks ago
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Jennifer Hillman Jackson ♦ 25k
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5 weeks ago by
johnathanwong4 • 10
