Question: Problems with understanding cufflinks output
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h.stotz • 20 wrote:
Good evening,
I did Cufflinks correspnding to an annotated genome. I want to download transcripts to a specific gene. This particular gene has a transcript_id that corresponds to the gene of the annotated genome, but there is not "CUFF.#" for the gene_id. Nevertheless, there is FPKM information. I judge this to mean that there are transcripts detected, but I do not understand why there no "CUFF.#" information. Can you explain this to me? How could I obtain the corresponding transcripts from the RNAseq experiment?
Kind regards,
Henrik