Question: Bam filter does not work the way I expect
0
anamabrantesc • 0 wrote:
I am having difficulty with NGS: Bam Filter tools. The condition that appear in the resulting JSON filter rules are not the conditions I chose, and the resulting reads are not the ones I want. For instance using
{
"filters": [
{
"mapQuality": ">=15",
"id": "1"
},
{
"isMapped": "true",
"id": "2"
},
{
"isMateMapped": "true",
"id": "3"
}
]
}
I get many reads with mapq = 0... What am I doing wrong?
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modified 6 months ago
by
Jennifer Hillman Jackson ♦ 25k
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written
6 months ago by
anamabrantesc • 0
