Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Large datasets and memory usage
0
gravatar for nd1091
10 months ago by
nd1091 • 0
nd1091 • 0 wrote:

Hi, My data set (multiple, 17 pair ended) has total size of 87 GB. I want to run trinity denovo assembly. But as I have to prepocess the raw files number of files are increasing and I have almost used up all my space. My proprcoessing steps are,

FASTQC>Trimmomatic>FASTQC>fastq Interlacer> fastq de interlacer>concatenate>trinity.

So, as a solution can I delete my raw FASTQ files and other intermediate files in history to accommodate more space to run the tool? will it interfere my run?

Thanks, Nihar

delete download account purge quota • 301 views
ADD COMMENT • link •
modified 10 months ago by Jennifer Hillman Jackson ♦ 25k • written 10 months ago by nd1091 • 0
0
gravatar for Jennifer Hillman Jackson
10 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

You can permanently delete any datasets that will not be used as inputs again. Download and save a copy of any that you might want to access or use again later.

FAQs: https://galaxyproject.org/support/

Thanks! Jen, Galaxy team
ADD COMMENT • link written 10 months ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 175 users visited in the last hour