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Question: Synteny
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gravatar for Claudio Casola
10.4 years ago by
Claudio Casola • 20
Claudio Casola • 20 wrote:
Hello, I found Galaxy extremely helpful in the past months and I have an issue that could again be solved using your wonderful platform. I am playing with a bunch of sequences (genome coordinates) from the human genomes that I obtained from some blast searches. I would like to see if these exact sequences are shared by (in synteny with) chimp, orang and macaque. I got MAF blocks from Galaxy and played with them, but I don't see an easy solution. It would be great if you have some suggestion about how to work with synteny using Galaxy, if possible. Thanks a lot! Claudio Casola Postdoctoral fellow, Hahn Lab Department of Biology 1001 East Third Street Bloomington, IN 47405-3700 Indiana University 812-856-7016 ccasola@indiana.edu
galaxy • 828 views
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modified 10.3 years ago by Anton Nekrutenko ♦ 1.7k • written 10.4 years ago by Claudio Casola • 20
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gravatar for Anton Nekrutenko
10.3 years ago by
Anton Nekrutenko ♦ 1.7k
Penn State
Anton Nekrutenko ♦ 1.7k wrote:
Claudio: Let me clarify. Do you want to know if the extracted MAF blocks correlate with the synteny map of a given region? Thanks, anton galaxy team Anton Nekrutenko Asst. Professor Department of Biochemistry and Molecular Biology Center for Comparative Genomics and Bioinformatics Penn State University anton@bx.psu.edu http://nekrut.bx.psu.edu 814.865.4752
ADD COMMENT • link written 10.3 years ago by Anton Nekrutenko ♦ 1.7k
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