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• How to download blastn to scaffold from toolshed?
  Hi I am using galaxy for my RNA seq analysis. I have made a metatransciptome and used this for d...
• CummeRbund error in galaxy local
  Hi is there a protocol or tutorial that shows how to use CummerRbound after cuffdiff ? I downloa...
• Downloading data? option gone?
  Hi, I want to perform a bulk download from my galaxy history. There used to be an option to expo...
• virome data analysis
  I want to know how to analysis virome data for viral metagenome study from de novo assembled blas...
• Problem with toolshed installed deepTools on CloudMan instance
  I successfully installed deepTools using the toolShed from the Galaxy main repos. The problem is ...
• Confusion regarding gffread tool in Galaxy
  Dear All, I am new to analysis of RNA sequencing data. I am looking to map small RNA sequencing ...
• Problem With Downloading
  Hi I am trying to download the results of my analysis (.sam files) from Galaxy main. The downloa...
• Downloads of big data
  Dear all, unfortunatelly my fastq files from RNASeq are already very large and become even larger...
• Uploading and using compressed data
  If I upload a data in compressed format through the FTP server how can I extract my file from thi...
• Information
  Dear Sir/Madam, I would like to download the chip seq data from the web links. it comes as aligne...
• How to analyse the gene expression matrix which I downloaded from GEO by Galaxy?
  I downloaded the gene expression matrix from the GEO, it is excel format. In this file, there are...
• Directly Extracting Results From Galaxy
  We (BioBike) would like to do to Galaxy what Galaxy does to the UCSC browser, that is, be able to...
• About CHIP Seq Data Download
  Hello, I am a new learner in bioinformatics tools and want to learn how analyze chip seq data in ...
• Uploading Gz Files
  I am unable to load the raw alignment data from the broad institute datasets available from the u...
• How To Do An Go Enrichment Analysis In Galaxy?
  Hi everyone, I got a list of differentially expressed genes from my RNA-seq data. Is there a t...
• Do i need to make history accessible for download "Export history to File"?
  Hi, I'm rather new to galaxy and I'm confused with documentation. I'm attempting to download wh...
• TopHat aligning with ensembl in Galaxy
  I'm using the Galaxy interface to analyse RNAseq data. I've successfully aligned using the defaul...
• RNA genes count using HTseq
  Hello: I am new to Galaxy, but based on my understanding of how things work, I mapped some RNA-s...
• Analysis workflow of miRNA-seq data
  I'm looking to analyse RNA-Seq data from miRNA. How similar is the workflow to RNA-seq analysis?
• Finding gene names from TopHat results.
  Hello, I am trying a build a workflow for RNA-Seq analysis and I want to verify my methods via co...
• Unzip files on Galaxy
    Hello, I have a fastq.gz file downloaded from SRA that need unzipped. How can I do this on Ga...