Question: Workflow Api
0
Simon Lank • 30 wrote:
Hi Again Galaxy team.
I'm attempting to use the new workflow API, which I understand is
still in
development. I created a test workflow with a single input, and was
able to
use 'example_watch_folder.py' to successfully execute it as a history
and
get the output to a specified location.
My question is how I can modify the script to accept multiple inputs
(i.e.
how do I define which files in the input folder I want to be each
input) and
if there's a way to specify runtime parameters. For instance, the
workflow I
want to execute has a filter step on a tabular input item as one of
the
later steps which needs to be defined at runtime. How would I specify
this
in the 'watch_folder.py' parameters? or is this not possible yet?
FYI, I know perl but not python, so ultimately I want to wrap the
python
scripts into a larger perl script to execute recursive workflows.
Thanks for all your help. Galaxy is an amazing tool and the workflow
API is
a fantastic improvement.
Simon
Simon Lank
Research Specialist
O'Connor Lab, WNPRC
555 Science Dr. Madison WI
(608) 265-3389
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modified 7.4 years ago
by
Dannon Baker ♦ 3.7k
•
written
7.5 years ago by
Simon Lank • 30
