Hi Galaxy support,
I have ran paired end files for a staphylococcus aureus genome (Illumina Miseq, paired end) through the upload, then trimmed using trimmomatic, and now am trying to align these to a reference staph aureus genome (which I got from the UCSC Archaea genome - Staphylococcus aureus Mu50) using Bowtie.
I am uploading each of the paired end file (paired versions), and then am uploading the Mu50 genome in the reference genome section. When I click on execute, however, I keep getting the same error:
Settings: Output files: "genome.*.bt2" Line rate: 6 (line is 64 bytes) Lines per side: 1 (side is 64 bytes) Offset rate: 4 (one in 16) FTable chars: 10 Strings: unpacked Max bucket size: default Max bucket size, sqrt multiplier: default
and ...
Settings: Output files: "genome.*.bt2"
S Line rate: 6 (line is 64 bytes) Lines per side: 1 (side is 64 bytes) Offset rate: 4 (one in 16) FTable chars: 10 Strings: unpacked Max bucket size: default Max bucket size, sqrt multiplier: default
and ...
Settings: Output files: "genome.*.bt2" Line rate: 6 (line is 64 bytes) Lines per side: 1 (side is 64 bytes) Offset rate: 4 (one in 16) FTable chars: 10 Strings: unpacked Max bucket size: default Max bucket size, sqrt multiplier: default
I am unsure of how to untangle this error report - could you please provide feedback as to why these inputs are failing? I look forward to hearing back!
admin edit: remove email
Sincerely, Pranay Randad.
