Question: Galaxy cummeRbund fails to identify sample name for X and Y axis for scatter and volcano plot
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deepak.bharti03 • 20 wrote:
Hello, I have cuff diff sqlite db for 2 samples and I wish to visualise the result using galaxy-cummeRbund. I have no issue to get plots like density, dendrogram, PCA , and box plot but when I want to use scatter plot and volcano plot ,it fails to identify the name for X and Y axis (no options available ). Can someone please help me to know what I am doing wrong?
NOTE : I followed tuxedo pipeline in galaxy for RNASeq analysis. There are no biological replicates only two samples, control and treated one.
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modified 11 months ago
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Jennifer Hillman Jackson ♦ 25k
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14 months ago by
deepak.bharti03 • 20
I have the same problem. Has this been answered?
Not yet. But when I used the generated sql file for analysis purpose outside of galaxy it works. unfortunately there are not much information on galaxy standard error log so I don't know what is the actual problem. honestly I did not go to look entire R script of galaxy-cummerbund so unable to say what actually wrong with data or script.