Question: Query in uploading data in stringtie
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gravatar for sinha.puja
14 months ago by
sinha.puja • 0
sinha.puja • 0 wrote:

When I am using stringtie in galaxy, the one option is Reference annotation to use for guiding the assembly process so how to upload gtf reference annotation in the column. However I have downloaded the human gtf file from ensemble and it also showed in my history in galaxy but the column in stringtie shows no gtf data set available.

galaxy • 355 views
ADD COMMENT • link • modified 14 months ago by Jennifer Hillman Jackson ♦ 25k • written 14 months ago by sinha.puja • 0
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gravatar for Jennifer Hillman Jackson
14 months ago by
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Try assigning the datatype gtf to the reference annotation dataset in your history. This is how:

Thanks! Jen, Galaxy team

ADD COMMENT • link written 14 months ago by Jennifer Hillman Jackson ♦ 25k
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