Question: TSS distrubtion for ChIP-Seq
0
xiang-jiao.yang • 10 wrote:
I have been using ChIP-Seq and want to display peak distribution at the transcription start sites (TSS). Is there a MakeTSSDist tool in Galaxy main?
Heads up! This is a static archive of our support site. Please go to help.galaxyproject.org if you want to reach the Galaxy community. If you want to search this archive visit the Galaxy Hub search
2
Devon Ryan • 1.9k wrote:
It makes much more sense to show the signal distribution around the TSS, since peak distribution will rely heavily on the peak caller and its settings. The normal way to do this is to make bigWig files with bamCoverage or bamCompare, compute the coverage around the TSS with computeMatrix reference-point and then plot it with plotProfile or plotHeatmap.
0
Please log in to add an answer.
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 16.09
Traffic: 171 users visited in the last hour