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Question: select line including special content and the following row as well
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gravatar for valasek
17 months ago by
valasek • 0
valasek • 0 wrote:

I am beginner using galaxy. I would like to assort my fasta dataset about mature miRNA from mirbase to contain only miRNA of rattus norvegicus. I tried to use 'Filter and Select - Select lines that match an expression' command but I was able to select title row that contain the rno-miRNA expression.

Is it possible define somehow to select the next line as well when it find the pattern?

Any suggestion is appreciated.
select galaxy • 376 views
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modified 17 months ago • written 17 months ago by valasek • 0
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gravatar for Hotz, Hans-Rudolf
17 months ago by
Hotz, Hans-Rudolf • 1.8k
Switzerland
Hotz, Hans-Rudolf • 1.8k wrote:

Convert your fasta file to a table (using the tool 'FASTA-to-Tabular'), run your selection, and convert the outcome back to fasta (using the tool Tabular-to-FASTA)

Hope this helps Regards, Hans-Rudolf
ADD COMMENT • link written 17 months ago by Hotz, Hans-Rudolf • 1.8k
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gravatar for valasek
17 months ago by
valasek • 0
valasek • 0 wrote:

Thanks Hans-Rudolf. It works well.
ADD COMMENT • link written 17 months ago by valasek • 0
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