Question: One Question About The Genome Coordinates When Using Fetch Sequences
0
Sean • 10 wrote:
Hi,
I have one stupid question. The coordinates of the region chr1 2351533
-
2351843 from UCSC (hg18) will retrieve 311 bases. However, when I use
Fetch
Sequences from galaxy, it will only retrieves 310 bases. Apparently,
the
first base of the 311 bases is missing from the Fetch Sequences result
because the ending bases are the same.
Does this mean that I need to modified the coordinates first and then
use
the Fetch Sequences to get the correct sequence? I thought UCSC and
galaxy
were both 0 base?
Thanks.
Sean
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modified 7.7 years ago
by
Jennifer Hillman Jackson ♦ 25k
•
written
7.7 years ago by
Sean • 10