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Question: Unable to use shRNAseq tool in Galaxy
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gravatar for kitson_liew
23 months ago by
kitson_liew • 0
kitson_liew • 0 wrote:

Dear Sir,

A very good day to you. I encountered some problem while trying to use the web-based Galaxy shRNAseq tool in my Window PC.

I first downloaded the shRNAseq tool from the following repository link https://toolshed.g2.bx.psu.edu/repository?repository_id=2f9e681ef9a29c0e

Thereafter, I tried to get the tool as per the tutorial (http://bioinf.wehi.edu.au/shRNAseq/galaxy.html) but without success.

Could you kindly advise the solution for this problem? Hope to hear from you soon. Thank you very much.

Cheers,

Kitson
edger shrna-seq • 377 views
ADD COMMENT • link •
modified 23 months ago by Jennifer Hillman Jackson ♦ 25k • written 23 months ago by kitson_liew • 0
0
gravatar for Jennifer Hillman Jackson
23 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This tool was last updated 2 years ago. It may not be compatible with the latest Galaxy releases. Also, running Galaxy as a local on a PC can be problematic unless a virtual environment is used.

I suggest contacting the tutorial and tool author (both appear to the be the same) to find out the usability status of the materials and tool. One way to do this is through the tool shed itself. Log in at http://usegalaxy.org/toolshed, navigate to the tool, and under the top right menu "Repository Actions" - choose contact author.

Hopefully, they are able to help you resolve the problems! Jen, Galaxy team
ADD COMMENT • link written 23 months ago by Jennifer Hillman Jackson ♦ 25k
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