I am following this: https://support.bioconductor.org/p/61509/
After HTseq, Deseq2 cannot perform the (IP for B / IP for A) / (Input for B / Input for A). I did this by adding two different "Factors". The first with the RIPseq data (1st Factor level WT; 2nd Factor level KO) and the second the RNAseq data (1st Factor level WT; 2nd Factor level KO).
It gives the following error:
Fatal error: An undefined error occured, please check your intput carefully and contact your administrator.
Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors'
Error in row.names<-.data.frame(*tmp*, value = value) :
I google it and it seems that it's something regarding with the input names. I changed them but still the same.
What do you think guys that I am doing wrong?
Thanks! Joan
Here it is the full error:
Fatal error: An undefined error occured, please check your intput carefully and contact your administrator. Creating a generic function for 'nchar' from package 'base' in package 'S4Vectors' Error in
row.names<-.data.frame(*tmp*, value = value) : duplicate 'row.names' are not allowed Calls: rownames<- ... rownames<- -> row.names<- -> row.names<-.data.frame Warning message: non-unique values when setting 'row.names':Hello - Are you performing the analysis within Galaxy? If so, where? Galaxy Main http://usegalaxy,org, a local, a cloud, or some other public server (URL)?
Hi! I'm using the Galaxy Main http://usegalaxy,org