My local galaxy instance is connected with mysql.
When I run a job I get an error:
Traceback (most recent call last):
File "/home/oasis/data/galaxy-new/lib/galaxy/jobs/runners/local.py", line 128, in queue_job job_wrapper.finish( stdout, stderr, exit_code )
File "/home/oasis/data/galaxy-new/lib/galaxy/jobs/__init__.py", line 1278, in finish self.sa_session.flush()
File "/home/oasis/data/galaxy-new/.venv/local/lib/python2.7/site-packages/sqlalchemy/orm/scoping.py", line 150, in do return getattr(self.registry(), name)(args, *kwargs)
File "/home/oasis/data/galaxy-new/.venv/local/lib/python2.7/site-packages/sqlalchemy/orm/session.py", line 2004, in flush self._flush(objects)
File "/home/oasis/data/galaxy-new/.venv/local/lib/python2.7/site-packages/sqlalchemy/orm/session.py", line 2122, in _flush transaction.rollback(_capture_exception=True)
File "/home/oasis/data/galaxy-new/.venv/local/lib/python2.7/site-packages/sqlalchemy/util/langhelpers.py", line 60, in __exit__ compat.reraise(exc_type, exc_value, exc_tb)
File "/home/oasis/data/galaxy-new/.venv/local/lib/python2.7/site-packages/sqlalchemy/orm/session.py", line 2086, in _flush flush_context.execute()
File "/home/oasis/data/galaxy-new/.venv/local/lib/python2.7/site-packages/sqlalchemy/orm/unitofwork.py", line 373, in execute rec.execute(self)
File "/home/oasis/data/galaxy-new/.venv/local/lib/python2.7/site-packages/sqlalchemy/orm/unitofwork.py", line 532, in execute uow
File "/home/oasis/data/galaxy-new/.venv/local/lib/python2.7/site-packages/sqlalchemy/orm/persistence.py", line 170, in save_obj mapper, table, update)
File "/home/oasis/data/galaxy-new/.venv/local/lib/python2.7/site-packages/sqlalchemy/orm/persistence.py", line 692, in _emit_update_statements execute(statement, multiparams)
File "/home/oasis/data/galaxy-new/.venv/local/lib/python2.7/site-packages/sqlalchemy/engine/base.py", line 914, in execute return meth(self, multiparams, params)
File "/home/oasis/data/galaxy-new/.venv/local/lib/python2.7/site-packages/sqlalchemy/sql/elements.py", line 323, in _execute_on_connection return connection._execute_clauseelement(self, multiparams, params)
File "/home/oasis/data/galaxy-new/.venv/local/lib/python2.7/site-packages/sqlalchemy/engine/base.py", line 1010, in _execute_clauseelement compiled_sql, distilled_params
File "/home/oasis/data/galaxy-new/.venv/local/lib/python2.7/site-packages/sqlalchemy/engine/base.py", line 1146, in _execute_context context)
File "/home/oasis/data/galaxy-new/.venv/local/lib/python2.7/site-packages/sqlalchemy/engine/base.py", line 1344, in _handle_dbapi_exception util.reraise(*exc_info)
File "/home/oasis/data/galaxy-new/.venv/local/lib/python2.7/site-packages/sqlalchemy/engine/base.py", line 1139, in _execute_context context)
File "/home/oasis/data/galaxy-new/.venv/local/lib/python2.7/site-packages/sqlalchemy/engine/default.py", line 450, in do_execute cursor.execute(statement, parameters)
File "/home/oasis/data/galaxy-new/.venv/local/lib/python2.7/site-packages/MySQLdb/cursors.py", line 187, in execute query = query % tuple([db.literal(item) for item in args])
File "/home/oasis/data/galaxy-new/.venv/local/lib/python2.7/site-packages/MySQLdb/connections.py", line 278, in literal return self.escape(o, self.encoders)
File "/home/oasis/data/galaxy-new/.venv/local/lib/python2.7/site-packages/MySQLdb/connections.py", line 208, in unicode_literal return db.literal(u.encode(unicode_literal.charset))
UnicodeEncodeError: 'latin-1' codec can't encode character u'\u2018' in position 534: ordinal not in range(256)
I guess it may be caused by mysql ..
Any suggestions would be greatly appreciated..
Thanks...
