Question: Error while Using 'run-workflow'
1
gravatar for amey.damle
2.4 years ago by
amey.damle • 30
amey.damle • 30 wrote:

Hi Everyone , I am having another problem on workflow run using the bioblend library of python for galaxy API Here is the error which i am getting , can anyone explain me how to solve this , where i am wrong ??

my code is bImportInputsToHistory = True; dataset_map = { '1': {'id': 'eaa9b06464bd346f', 'src': 'ld'}, '2': {'id': 'b2486a20bc56b90f', 'src': 'ld'}, '3': {'id': '4a56addbcc836c23', 'src': 'ld'}, '4': {'id': 'b8a0d6158b9961df', 'src': 'ld'} } param = {'blastn': {'param': 'evalue', 'value': '1e-06'} }; aResult = gi.workflows.run_workflow(sWorkFlowID, dataset_map, param, sHisitoryID, sHistoryName, bImportInputsToHistory) print (aResult)

and the error i am getting is

Traceback (most recent call last): File "lib/bioblend/wbint_workflow.py", line 117, in <module> aResult = gi.workflows.run_workflow(sWorkFlowID, dataset_map, param, sHisitoryID, sHistoryName, bImportInputsToHistory) File "/var/www/WebInterface/lib/bioblend/bioblend/galaxy/workflows/__init__.py", line 266, in run_workflow return Client._post(self, payload) File "/var/www/WebInterface/lib/bioblend/bioblend/galaxy/client.py", line 171, in _post files_attached=files_attached) File "/var/www/WebInterface/lib/bioblend/bioblend/galaxyclient.py", line 131, in make_post_request r.status_code, body=r.text) bioblend.galaxy.client.ConnectionError: Unexpected response from galaxy: 400: {"err_msg": "Workflow cannot be run because an expected input step '360' has no input dataset.", "err_code": 0}

fastq workflow galaxy dataset • 721 views
ADD COMMENT • link • modified 2.4 years ago • written 2.4 years ago by amey.damle • 30
0
gravatar for Jennifer Hillman Jackson
2.4 years ago by
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The error suggests that one of the inputs is missing or is in an error state. This could be an original input dataset or a dataset that is created by early workflow tools then used as input by downstream tools.

Was this the problem?

Jen, Galaxy team

ADD COMMENT • link written 2.4 years ago by Jennifer Hillman Jackson ♦ 25k
0
gravatar for amey.damle
2.4 years ago by
amey.damle • 30
amey.damle • 30 wrote:

Hello mam , I am not able to get which input is missing. all the inputs are correct i guess , i am bit confused in dataset-map , can you help me for this. these mapping is like '1': {'id': 'eaa9b06464bd346f', 'src': 'ld'} , 1 is just index , id is dataset id and src , i don't know , i just used it.

ADD COMMENT • link written 2.4 years ago by amey.damle • 30
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