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• conversion to Bedgraph files
  Hi, I have BAM files from Bowtie2. I want to use MACS2 bdgdiff in galaxy to identify differntial...
• An odd number of differential peaks in MACS2
  hi, I'm working with ChIP-seq data and using MACS2 version- macs2 2.1.0.20140616. I run MACS2 c...
• WIG file from MACS2
  Hi, I have been using MACS2 in Cistrome to call peaks from ChIP-seq data. It appears as though i...
• Compare bedgraphs of two treatments after MACS2 callpeak.. do I need SPMR?
  Hey y'all, I'd appreciate your help here! Do I really need to use the SPMR option in MACS2 to co...
• MACS2 bdgdiff output empty
  hello, I'd like to report an issue I've been having with the MACS2 bdgdiff function in the Galax...
• MACS2 2.1.0.20151222.0 predictd Error: use updated version instead 2.1.1.20160309.0
  I got an error message when using galaxy MACS2 predictd: Tool execution generated the following ...
• How to do the peak calling with "MACS2 bdgbroadcall" for H3K9me3 ChIP-seq
  Hi, I try to use the MACS2 bdgbroadcall to analyze my H3K9me3 ChIP-seq data, but there is no opti...
• Error in loading dependencies due to path length
  Hi, on our local Galaxy-instance we ran into the following error running MACS2: /home/galax...
• How to extract files out of List of Dataset Pairs
  Hello, I run Bowtie2 with List of Dataset Pairs. Unfortunately, MACS2 (Galaxy Tool Version 2.1.0...
• MACS2 bdgdiff output is empty
  Hello, I'd like to report an issue I've been having with the MACS2 bdgdiff function in the Galax...
• Macs2 Bdgdiff help
  Hello, I am new to processing ChIP seq data I want to do a differential peaks comparison between...
• MACS2 bdgdiff gives empty results in galaxy, what to do?
  Hi all, I am trying to generate differential peaks of 2 sets of ChIP-seq experiments: cells trea...
• MACS2 run error
  Hello to anyone willing to help, I tried running Bowtie2 bam files on MACS2 to get peaks, howeve...
• MACS shows error for MEDIP Seq Data
  Dear sir, I tried to do peak calling for Medipseq Data using MACS. i have done mapping using Bo...
• Macs2 running to one sample
  Good morning, Im working with samples from ChIP-seq, and now i'm using macs2, however when i use...
• ChIP-seq analysis on small genome
  Hello, I am using Galaxy to analyze ChIP-seq data of a mammalian cell line containing virus episo...
• MNase ChIP-seq paired-end data analysis ?
  Hello everyone! Sorry for long explanation! I did paired-end ChIP-seq for my input and IP sample...
• peak calling in MACS2
  I am trying to do peak calling of paired-end sequences using MACS2 in Galaxy. The Filter SAM file...
• Empty peaks after MACS2 (Galaxy Version 2.1.0.20151222.0) using galaxy
  HI, I am working on Chipseq and have Followed the pipeline till macs2 where I get results as emp...