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Question: DiffBind issues on Galaxy
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gravatar for morgan.thenoz
2.6 years ago by
morgan.thenoz • 0
morgan.thenoz • 0 wrote:

Hi,

I'm trying to use DiffBind on Galaxy, and i got always the same error, and my output files are empty. Here is the error message:

WARNING: ignoring environment value of R_HOME [1] "en_US.UTF-8" Loading required package: GenomicRanges Loading required package: methods Loading required package: BiocGenerics Loading required package: parallel Attaching package: 'BiocGenerics' The fo

I googled it and i found 1 or 2 discussion about that problem but without solving answers.

If you can help me please.

Thanks
galaxy chip-seq • 1.0k views
ADD COMMENT • link •
modified 2.6 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.6 years ago by morgan.thenoz • 0
0
gravatar for Jennifer Hillman Jackson
2.6 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

I can reproduce the problem. This appears to be a dependency issue at http://usegalaxy.org, but that will be confirmed. Track the correction and testing progress here: https://github.com/galaxyproject/usegalaxy-playbook/issues/56

Admin update: The most current version of this tool should be used and earlier versions avoided: DiffBind differential binding analysis of ChIP-Seq peak data (Galaxy Version 2.6.5.0)

Thanks for reporting the problem, Jen, Galaxy team
ADD COMMENT • link modified 8 months ago • written 2.6 years ago by Jennifer Hillman Jackson ♦ 25k

Update details: https://biostar.usegalaxy.org/p/16241/

ADD REPLY • link modified 8 months ago • written 8 months ago by Jennifer Hillman Jackson ♦ 25k
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