Question: Fastx_Clipper.Xml And Fastq Illumina 1.3+?
0
gravatar for Peter
7.9 years ago by
Peter • 260
Peter • 260 wrote:
Hi all, Should the fastx_clipper.xml allow Illumina 1.3+ FASTQ as well as Sanger and Solexa FASTQ (and FASTA)? i.e. replace this: <param format="fasta,fastqsolexa,fastqsanger" name="input" type="data" label="Library to clip"/> with this: <param format="fasta,fastqsolexa,fastqillumina,fastqsanger" name="input" type="data" label="Library to clip"/> Peter
• 737 views
ADD COMMENT • link • modified 7.8 years ago by Jennifer Hillman Jackson ♦ 25k • written 7.9 years ago by Peter • 260
0
gravatar for Jennifer Hillman Jackson
7.8 years ago by
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hi Peter, For now we are going to recommended just using the Fastq Groomer first, then the Clipper, to keep the tools set simple. Apologies for the late reply, we were discussing the option internally. Thanks for all the great ideas and contributions! Best, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org
ADD COMMENT • link written 7.8 years ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 162 users visited in the last hour