Question: Macs Empty File Format
0
Keith E. Giles • 170 wrote:
I can not seem to get MACs to call peaks for some very large data sets
(30
million aligned reads). I know that this is a computational issue and
not a
matter of there not being peaks. Do the ChIP and Input files need to
be in
BED-3? If not, what type of file format do they need to be in? They
are in
BED, but do have different numbers of columns.