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Question: Mac coding environment / Run Planemo and Galaxy under Linux...(Docker?)
0
gravatar for Remi Marenco
2.6 years ago by
Remi Marenco ♦ 80
Washington DC
Remi Marenco ♦ 80 wrote:

Hi!

I am writing tools and workflows for Galaxy. I am under a Mac OSX.

I found it quite challenging to use all the features available in Galaxy under this Operating System. I don't think pushing more Mac compatibility is realistic and useful (as Galaxy is mostly running under Linux), so I thought it could be really nice if I could use Docker (or another technology) to run Galaxy but still have my tool files under my OSX environment.

Maybe some kind of mapping between Galaxy under Docker and the folders inside my Mac. For example:

Under OSX: MyTool/myTool.xml and MyTool/myTool.py Under Docker or another technology running Linux: Galaxy / Planemo with MyTool mapped into the right folder

I know there are a lot of documentation out there, and Docker efforts, so I maybe missed something.

And let me know how you are handling these kind of setup if you have the same :), so we can come up with a documentation and best practices.
tool development mac galaxy code • 717 views
ADD COMMENT • link •
modified 2.6 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.6 years ago by Remi Marenco ♦ 80
0
gravatar for Bjoern Gruening
2.6 years ago by
Bjoern Gruening ♦ 5.1k
Germany
Bjoern Gruening ♦ 5.1k wrote:

Hi Remi,

I think you can easily use the planemo-machine VM, which we use for tool-dev training. A recent image can be found here: https://drive.google.com/open?id=0B2xSE9muunQPdXdfNVRIS09lWUU

You can also build you own image. Instructions can be found here: https://github.com/jmchilton/planemo-machine

Ciao, Bjoern
ADD COMMENT • link written 2.6 years ago by Bjoern Gruening ♦ 5.1k

Seems the login is ubuntu and the password ubuntu too (Just for the record so people who read this can know the credentials)

ADD REPLY • link modified 2.6 years ago • written 2.6 years ago by Remi Marenco ♦ 80
0
gravatar for Remi Marenco
2.6 years ago by
Remi Marenco ♦ 80
Washington DC
Remi Marenco ♦ 80 wrote:

Awesome!

Trying this out :)
ADD COMMENT • link written 2.6 years ago by Remi Marenco ♦ 80
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