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  Hello all, I have a pressing question... To start with, I have read the Trinity methods paper ...
• Galaxy RSEM error
  Dear all,   I am trying to run RSEM via Galaxy but there is a problem. FYI, 1. Reference sequ...
• Correct way of merging samples for father, mother, child trio variant calling
  I am new to NGS data analysis and I'm working in a multiple-sample variant calling workflow. I ha...
• Single Cell RNA-Seq Pipeline?
  If I want to analyze single cell RNA-Seq data in Galaxy, what is the best pipeline to use? I've b...
• plotting multiple bigwigs in agregate plots
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• How to analyse the gene expression matrix which I downloaded from GEO by Galaxy?
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• Sample name on BedCov results
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• Clustering With Cuffcompare Or Cuffdiff Results
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• How to assign a single species per sequence in Megablast
  Hello, I am investigating parasite (nematode) communities, using the ITS-2 for identification. M...
• Replicate Common Gene Names
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• voom normalized count data matrix (Differential count 0.3.0)
  Hi, I have used voom from the "Differential count" package and it worked smoothly. I would like t...
• Byte-Range Request Problem
  Dear all, I'm currently trying to set up a Galaxy instance behind an Apache server for my lab. I...
• NGS Qc: MultiQC not recognizing FASTQC raw results from list
  Hi, I am trying to aggregate results from FAST Qc lists by MultiQC, but MUltiQC isnt recognizing...
• Convert multiple FASTQ files into one BAM file
  Hello guys! I recently started working with NGS analysis and I may have a stupid question to ask....
• getting number of SNPs, insertion/deletion from VCF with VCFfilter
  Hello, I am trying to extract from a VCF file the number of SNPs: Single nucleotide variants , I...
• Dataset generation errors
  I got an error when running my local galaxy instance. Dataset generation errors Dataset 39: work...
• Remove batch effects with galaxy
  Hello, I am having a problem with batch effects on my RNA sequencing data, where I try to determ...
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  Hi, I'm trying to visualize results from the DESeq2 pepeline in interactive html, useing Glimma....