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• Align.seq metagenomic data
  I am new to galaxy and i am using metagenomic data after unqiue.seqs step i use the unique.reads...
• Trouble Clipping Barcodes On Data
  Dear Galaxy Users,I have a data set, for which I'm trying to "Clip" adapter sequences. After spli...
• extraction DNA sequence using galaxy
  How can I extract DNA sequence using galaxy from UCSC if I have their coordinates?  whenever i tr...
• stringtie error in refernce genome file
  hi i m working on human datasets i tired running stringtie with the bam file from hisat....i get...
• Helicos sequencing data
  I've downloaded a set of SRA files containing Helicos sequencing data.  Are there any tools on Ga...
• Problem running Clustal 2.1 Multiple Sequences Alignment - an instance of 'std::bad_alloc'
  Dear All, I've been trying to analyze reads from a short transcript. The data I have was obtaine...
• error with sam to bam conversion
  Hi I am trying to convert my SAM file to BAM file but I always get this error message *Error ex...
• Dataset Error An error occured while running the tool upload1.
  Hi, I was able to download my data into the history panel ~63 Gb 20 shown 63 hidden all files...
• Sam to Bam conversion
  I followed the galaxy tutorial for mapping genome sequencing data. I mapped my paired end sequenc...
• uploading bam file
  I am trying to upload a bam file that was generated by rna-star (using Illumina1.9 sequencing dat...
• problems with "fetch data"
  HI, I am trying to extract some genomic sequences using the Fetch data tool but I keep getting th...
• Cufflinks Advice
  I attempted to run cufflinks on some RNA sequencing data. It seemed to complete without any error...
• cDNA sequencing data analysis
  I am new to galaxy and sequencing data analysis. I have RAW files from cDNA sequencing and I am l...
• Upload fails for larger file, followed by FASTQ to FASTA conversion error
  I am trying to generate a FASTA file from a FASTQ file that was generated on an Illumina MiSeq. ...
• Problem with bam files for exome sequencing analysis
  Hello everyone, I have one problem at the very beginning of the exome sequencing analysis, prob...
• Analysis 454 Quality Data
  Hi, I am starting off with 454 read data in an sff file. I would like to get quality statistics ...
• miRNA seq data TRIMMOMATIC
  I am trying to analyze microRNA sequencing data for 8 datasets ( each dataset is a cell line). I ...
• aaChanges Errors
  When I try to run aaChanges  I get the following error, Sequences are not currently available for...
• Error message after running FreeBayes
  Hi, I am quite new with Galaxy only been working with it for a month so please bare with me. I a...
• Trimmomatic and Trim Galore are not working.
  I am performing an RNA-seq and am trying to trim adapter sequences with Trim Galore. When I made ...
• Internal Fail error 500 or file failed
  What am I doing wrong? My files have an extension of .fastq. I am told that these files contain r...
• Fatal Errors occurring with htseq analysis
  Hi, I am in the process of analyzing some RNAseq data. I uploaded the data and successfully mapp...