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Question: combining zipped fastq data files
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gravatar for joseph.andrews
2.9 years ago by
joseph.andrews • 20
Canada
joseph.andrews • 20 wrote:

Hello Galaxy!

We recently had some sequencing done, and the data was put into a dropbox file for me to get.  Because of file size constraints in dropbox, the sequencing facility broke each fastq file into 7-10 smaller, zipped files.  I would like to recombine the files before analyzing using Galaxy.  Is there a tool in Galaxy that could be used to do this?  Thanks in advance!

 

J
zipped fastq merging files • 706 views
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modified 2.9 years ago by Jennifer Hillman Jackson ♦ 25k • written 2.9 years ago by joseph.andrews • 20
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gravatar for Jennifer Hillman Jackson
2.9 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Load the data into Galaxy (using the dropbox URL to keep it simple). The files will be uncompressed when added to a history. Once all are present, use the tool Concatenate datasets tail-to-head to merge.

Thanks, Jen, Galaxy team
ADD COMMENT • link written 2.9 years ago by Jennifer Hillman Jackson ♦ 25k
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