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• Fasta file download
  Hello, I uploaded FASTQ files so that I may convert them to fasta files, and now i cant download ...
• import of refrence genome
  How can I add reference human genome to local galaxy instance? I've got fasta file and bwa index,...
• How to upload 2.5G file to Galaxy
  How can I upload 2.5G file to Galaxy? Best Regards Tali
• How to upload files larger than 50G?
  I'd like to convert the MultiZ MAF file for chromosome 1 to FASTA format. The UCSC .maf file is a...
• Tuxedo_Custome build genome
  I have uploaded tomato genome in GFF3 and FASTA format in galaxy. However, when I run Tuxedo, my ...
• how can I use a custom adapter sequence in trimmomatic while in Galaxy?
  Hi, I want to use a custom adapter sequences in trimmomatic. But when I upload a fasta file, the...
• Galaxy does not recognize tab delimited file after upload
  Whenever I upload a tab-delim file (Get Data/Upload File from your computer), even though I can s...
• Upload fails for larger file, followed by FASTQ to FASTA conversion error
  I am trying to generate a FASTA file from a FASTQ file that was generated on an Illumina MiSeq. ...
• GTF to FASTA
  hello I have gtf files from rna seq and i want to convert them to fasta to obtain sequence of ce...
• Upload files problem
  I am trying to upload RNA-seq files from our local server. One third of the files have been uploa...
• using an imported genome
  How do I format an imported genome fasta file so that I can use it as the database for BEDtools f...
• Uploading NCBI Genome
  HI all, I am having difficulty uploading a complete genome in fasta format. I have located the g...
• Why won't Galaxy recognise uploaded hg19 .fasta.gz file?
  Hi. I'm doing RNA-seq analysis for the first time and want to upload the hg19 genome from 1000 Ge...
• lastz not running
  I want to align my reads to a short fasta file to determine how many reads I have that match my t...
• how to upload file via ftp to galaxy
  i want to upload my files to galaxy via ftp, how can i do that? i want to analyze my exome data
• Fasta Generation From Pileup For Snp Detection
  I'm interested in generating a fasta file from Ilumina paired reads of my wild type strain. I hav...
• Accessing Data From The Filesystem
  Hi, Is it possible to access data on the filesystem without uploading it. i.e. I install galaxy ...
• how to get fasta sequences of cufflink assembled transcripts
  hi i request you to help me in getting the fasta sequences of assembled transcripts by cufflink....
• Rename sequence error
  Hello, So I'm trying to create a metagenomic workflow, but I can't seem to get the formatting co...
• how to do FTP upload
  How can I upload the files to FTP server of Galaxy? I need to align two fastq files, which are 7 ...
• uploading FASTA file of size 8gb to Galaxy
  Hi , i am not able to upload NCBI SRA fasta file of size 8gb to Galaxy.  Pl advice on getting dat...
• How do i remove multiple adapter sequences from my RNAseq reads?
  Hi there, I want to remove the universal adapters as well as the index adapters in each data fil...