Question: Dataset subtraction for overlapping regions
0
gravatar for kristi.stephenson
3.1 years ago by
United States
kristi.stephenson0 wrote:

I am trying to subtract two datasets, where they do not have identical start and stop positions, but overlapping positions. This feature used to be available in Galaxy but I can no longer find it under Join, Subtract, and Group. Essentially what I want to be able to do is as follows. Are there any supporting tools on Galaxy to do this?

 

Data 1

chr1 10  50
chr1 50  100
chr1 100 150

Data 2

chr1 15  45
chr1 125 150

Subtracting Data 2 from Data 1 will yield:

chr1 10  14
chr1 46  50
chr1 50  100
chr1 100 124

galaxy • 618 views
ADD COMMENTlink modified 3.1 years ago • written 3.1 years ago by kristi.stephenson0
1
gravatar for Jennifer Hillman Jackson
3.1 years ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

The tool you are probably looking for is called Operate on Genomic Intervals > Subtract.

Hope this helps, Jen, Galaxy team

ADD COMMENTlink written 3.1 years ago by Jennifer Hillman Jackson25k
0
gravatar for kristi.stephenson
3.1 years ago by
United States
kristi.stephenson0 wrote:

Yes, thanks!

ADD COMMENTlink written 3.1 years ago by kristi.stephenson0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 182 users visited in the last hour