Question: BAM files after BWA MEM
1
j.d.helix • 10 wrote:
Hi,
BWA-MEM in Galaxy produces a BAM file. Could anyone please tell me if the BAM file is sorted (by chromosome coordinates) and/or index?
I found NGS:SAMtools/Sort BAM file is able to do the sorting, but I don't know which tools in Galaxy can index a BAM file (similar to samtools index)...
Thank you very much in advance!
DHelix
ADD COMMENT
• link
•
modified 3.3 years ago
by
Bjoern Gruening ♦ 5.1k
•
written
3.3 years ago by
j.d.helix • 10