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Question: Premature End-Of-File Error in Fastx_Clipper
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gravatar for mccoykg
3.4 years ago by
mccoykg • 80
United States
mccoykg • 80 wrote:

Hi all. I'm having trouble running fastx_clipper, which always returns an error like the following when I try to use it:

zcat: can't stat: /Users/vanopijn/galaxy/database/files/000/dataset_384.dat (/Users/vanopijn/galaxy/database/files/000/dataset_384.dat.Z): No such file or directory fastx_clipper: Premature End-Of-File (filename ='-')

Is this something anyone else has encountered, and do you know if it's a problem with fastx_clipper itself or something indicating a problem with the way my local instance of Galaxy is saving / accessing files? Thank you.
fastx_clipper fastx galaxy • 1.3k views
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written 3.4 years ago by mccoykg • 80

Haven't seen this before. Have you tested it with multiple input files?
 

ADD REPLY • link written 3.4 years ago by Bjoern Gruening ♦ 5.1k

Yep! I've tried lots of different FASTQ files, and they all return the same Premature End-Of-File error.

ADD REPLY • link written 3.4 years ago by mccoykg • 80
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