Bug in Cuffdiff in server Main??

Question: Bug in Cuffdiff in server Main??

3.5 years ago by

saphirashurttugal • 0

Spain

saphirashurttugal • 0 wrote:

Hi!!

I have a problem with Cuffdiff.

After to run it, it finished in red and reported this error:

Error in library("cummeRbund") : there is no package called 'cummeRbund'

Dataset generation errors:
https://www.dropbox.com/s/pussgpvu6n4x0yd/Errores%20Cuffdiff?dl=0

Help me, please :S

cummerbund software error bug cuffdiff • 1.3k views

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modified 3.5 years ago by dorota.komar • 10 • written 3.5 years ago by saphirashurttugal • 0

3.5 years ago by

Jennifer Hillman Jackson ♦ 25k

United States

Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This is a known issue that has been resolved in the code base. It is pending final incorporation and then publication onto the public Main Galaxy instance. We will be posting back to questions about the issue.

Thank you for your patience, Jen, Galaxy team

UPDATE 6/2/15: The problem has been cleared. Please let us know if any prior issues seem to be persistent. Best, Jen

Full Details: A: Error with cuffdiff

ADD COMMENT • link modified 3.5 years ago • written 3.5 years ago by Jennifer Hillman Jackson ♦ 25k

Hi!
I stil have some problems with Cuffdiff :(

Loading required package: BiocGenerics
Loading required package: parallel
Error: package 'parallel' could not be loaded
In addition: Warning messages:
1: package 'cummeRbund' was built under R version 3.1.2
2: package 'BiocGenerics' was built under R version 3.1.2
3: In library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) :
  there is no package called 'parallel'
Execution halted

Thanks ;)

ADD REPLY • link written 3.5 years ago by saphirashurttugal • 0

3.5 years ago by

saphirashurttugal • 0

Spain

saphirashurttugal • 0 wrote:

Hi!
I stil have some problems with Cuffdiff :(

Loading required package: BiocGenerics
Loading required package: parallel
Error: package 'parallel' could not be loaded
In addition: Warning messages:
1: package 'cummeRbund' was built under R version 3.1.2
2: package 'BiocGenerics' was built under R version 3.1.2
3: In library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) :
  there is no package called 'parallel'
Execution halted

Thanks ;)

ADD COMMENT • link modified 3.5 years ago • written 3.5 years ago by saphirashurttugal • 0