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Question: Where are the available MAF files?
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gravatar for david.adelson
3.5 years ago by
david.adelson • 10
Australia
david.adelson • 10 wrote:

Looking for available MAF data to use in a teaching situation.  The list of available files including MAF files does not seem to be available  (https://wiki.galaxyproject.org/Main/DataLibraries/Available%20Data).

I might be looking in the wrong place, but there is nothing in the shared data/available libraries page.

Thanks in advance,

Dave

 
data libraries maf • 813 views
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modified 3.5 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.5 years ago by david.adelson • 10
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gravatar for Bjoern Gruening
3.5 years ago by
Bjoern Gruening ♦ 5.1k
Germany
Bjoern Gruening ♦ 5.1k wrote:

Hi Dave,

I think all maf files are stored at the rsync server. For more details please refer to the Galaxy wiki: https://wiki.galaxyproject.org/Admin/UseGalaxyRsync

Ciao,

Bjoern
ADD COMMENT • link written 3.5 years ago by Bjoern Gruening ♦ 5.1k
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gravatar for Jennifer Hillman Jackson
3.5 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hi,

Bjoern is correct: the MAF datasets available on http://usegalaxy.org can be accessed either through the tools on the server (tool group "Fetch Alignments") or by downloading them from the Galaxy Rsync server. However, these were all sourced from UCSC. Any hosted in Galaxy's Rsync and a few others can be found directly on the UCSC Downloads server. Locate data by the primary genome's common name -> release version -> Conservation.

Best, Jen, Galaxy team
ADD COMMENT • link written 3.5 years ago by Jennifer Hillman Jackson ♦ 25k
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