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• Create a BedGraph of genome coverage
  Hello! Excuse me, where can I find "Create a BedGraph of genome coverage" tool?
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  Hello, It seems like the "operate on genomic inervals" tool is no longer available on Galaxy. W...
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  How do I define a format I uploaded to Galaxy to be "interval", and the genome "hg19"?
• tophat reference genomes
  HI All, There seems to be an issue with the tophat "built in" reference genomes? They only go up ...
• Problem using bowtie2
  Hi everyone I´m Miguel, I´m using galaxy for a scholar research. I´m having a problem using bow...
• Unspecified Genome Build
  I'm trying to use the "Extract Genomic DNA" feature from "Fetch Sequences" on Cufflinks-assembled...
• What to write in "Using reference genome" and "Annotation Regions"sections ?
  Hey, I am trying to use GATK through Galaxy and trying to call variants from my vcf file. "Selec...
• Extract Genomic DNA fasta file names?
  Hello, I ran the Extract Genomic DNA feature with my gtf file and reference genome fasta file. ...
• SICER is not available for the genome.
  I tried to use Sicer to run Chi-Seq data, but the error message showed "SICER is not available fo...
• Gatk Tools: Other Genome Available?
  Hi, The NGS: GATK Tools on main are so far only for human genome. Do you have an idea when other...
• tool error: Extract Genomic DNA
  Hi, I want to use Galaxy to "Extract Genomic DNA " in tools section for cow jun. 2014 (Bos_taurus...