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Question: How can I tell if the python code is a tool or a python wrapper?
1
gravatar for rlee03
3.7 years ago by
rlee03 • 50
United States
rlee03 • 50 wrote:

Hi! 

I am inside the galaxy-dist/tools/stats/  folder. Which of those files are strictly python code, standalone, and python wrappers? What is the feature I should be looking for to see if the python code is a wrapper for the python tool? 

May you please give an example in the galaxy-dist files? please be specific and avoid pronouns, Thanks!
develop distribution tools • 775 views
ADD COMMENT • link •
modified 3.7 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.7 years ago by rlee03 • 50
1
gravatar for Jennifer Hillman Jackson
3.7 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The files for tool wrappers come in pairs. Each will be named the same - one ending with a .py and the other .xml. Most Galaxy tools can be executed on the command-line. A simple way to obtain the command-line is to execute the tool in the UI and then examine the "i" info form for the run.

Example for the tool "Filter":

filtering.xml
filtering.py

More is in the wiki here:
http://wiki.galaxyproject.org/Tools

Best, Jen, Galaxy team

 
ADD COMMENT • link modified 3.7 years ago • written 3.7 years ago by Jennifer Hillman Jackson ♦ 25k
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